Welcome to genda documentation!

Date: January 21, 2016 Version: 0.1

Code Repository: http://github.com/jeffhsu3/genda

genda is Python package for working with genetic and genomic data using the python dataframe package pandas.

Contents:

• Installing genda
  • Installing from source
  • Binary Installers
  • Dependencies
• Introduction
• Related Software
  • Biology
• Exporting Data to R
• Working With VCFs
  • The VCF Class
• Running Aellic Expression Imbalance
• Working with SNP Arrays
  • The SNP Array class
• Working with PED files
  • The PED class
• Genotype
  • chi2_association
  • Hierarcical Clustering
  • Hardy-Weinberg
  • Fst
• Tutorials

Indices and tables

• Index
• Module Index
• Search Page