Installing genda

Working on a package atm.

Installing from source

The source is available from github:: git clone https://github.com/jeffhsu3/genda.git python setup.py install

Binary Installers

Work in progress

Dependencies

• ‘python <http://www.python.org>’_
• ‘numpy <http://http://www.numpy.org/’_
• ‘cython <http://www.cython.org/’_
• ‘scipy <http://www.scipy.org/’_
• ‘matplotlib] <http://matplotlib.org/>’_
• ‘pandas <http://pandas.pydata.org/>’_
• ‘pysam <https://code.google.com/p/pysam/>’_
• ‘bx-python <https://bitbucket.org/james_taylor/bx-python/wiki/Home>’_

Installing genda is easy given you have all the dependencies. pySam is a must and is a great tool for working with BAM files in python.

If you have pip, all the dependencies will be installed for you. Just run python setup.py install.